Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADCAAHDESPGNNVVDISVPPTTD
4LWZ Chain:A ((8-173))
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA-----RAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4LWZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111500 for 1268 contacts (-87.9/contact) +
2D Compatibility (PS) -18033 + (NN) -8539 + (LL) 1628
1D Compatibility (HY) -22800 + (ID) 7850
Total energy: -167094.0 ( -131.78 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_4LWZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LWZ-query.scw
PDB file :
Tito_Scwrl_4LWZ.pdb
: