Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADR--INQQRLALWQNYYDALAPLAKAGRIELPSIPDGCVQNAHMFYIKLRDIDD-----RSALINFLKEAEIMA--VFHYIPLHGCPAGEHFGEFHGEDRYTTKESERL--LRLPLFYNLSPVNQRTVIATLLNYFS |
| 3DR4 Chain:A ((28-386)) | --SVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITT-GEGGMITTNDDDLAAKMRLLRGQGMDPNR-------RYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGW--YEQKLARLGN--RVTKPHV---ALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFH--PMHIMPPYAHL----ATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAAL----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DR4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -253206 for 3121 contacts (-81.1/contact) +
2D Compatibility (PS) -37708 + (NN) -15933 + (LL) 988
1D Compatibility (HY) -23600 + (ID) 5950
Total energy: -335409.0 ( -107.47 by residue)
QMean score : 0.454
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