Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | SNINKAKVASVESDYSSIKSAALSYYSDTNK-IPVTPDG-QTGLNVLETYMESLPDKADIGGEYKLIKVGNKLVLQ---IGKDGEGVTLTEAQSAKLLSDIGKDKIYTGVTGDNFGEQLKDTTKIDNKALYIVLIDNTVMDSTK |
| 4KBU Chain:D ((76-170)) | -----AKVAAIEYDPNRSARIALLHYVDGEKRYIIAPDGLQVGQQVV-----AGPDAP--------IQVGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGREGD------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KBU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 14413 for 470 contacts (30.7/contact) +
2D Compatibility (PS) -9384 + (NN) -2500 + (LL) 2904
1D Compatibility (HY) -2800 + (ID) 1750
Total energy: 883.0 ( 1.88 by residue)
QMean score : -0.025
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