Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKMRVYSLLFMMLFALSIGANAQVKFFTDVNSKQIKTLQVKVAGELISEPYIALGGEEQIEINFDGLGSGYTRYAYNVVHCN-ADWTQSQLSPIEYMNGFQGTTIDDFANSIGTTTQYSNYRLLLPNDDVQFKVSGNYAIQVYNEDTPDQIIFTACFSVVEPVVNISASVSGNTDIDTNQSHQQVSFNINNKNFPITYPQTDLKIFVYQDNRRDNAVTDLQPMSILENQISYTYNRNLIFPAGNEYRRMEFLSNKYNGMHVENISFHNPYYNVELMTDYRRDKGTYQYDQDQDGRFFIRCSDCNDPDTEADYYIVHFTLACDPLPDGSVYLNGELFNNVLDEKSKMGYNFETKQYEKAVLLKQGSYNYQYLFVPTGSSVGQTGPIEGNYYQTQNEYSIYVYYRPMGARYDRLIGVT-TVRNEMQVF |
2W0C Chain:L ((1-335)) | -----------MIVKKKLAAGEFAETFKNGNNITI----IKAVGELVLRAYGADGGEGLRTIVRQGVSIKGMNYTSVMLHTEYAQEIEYWVGDLDYSFQ-EQTTKSRDVNSFQIPLR-DGVRELLPEDASRNRASIKSPVDIWIGGENMTAL--------------NGIVDGGRKFEAGQEFQINTFG------SVNYWVSDEEIRVFKEYSARA---------------KYAQNEG----------RTALEANNV------------PFFDIDVPPELDGVPFSLKARVRHKSKGVDGLGDYTSISVKPAFYITEGDETTDTLIKYTSYG---------STGSHSGYDFDDNTLDVMVTLSAG--VHRVFPVETELDYDAVQEVQHDWYDESFTTFIEVYSD------DPLLTVKGYAQILMERT |
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General information:
TITO was launched using:
| RESULT:
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Template: 2W0C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 9182 for 2395 contacts (3.8/contact) +
2D Compatibility (PS) -33907 + (NN) -824 + (LL) 6756
1D Compatibility (HY) -8800 + (ID) 3350
Total energy: -30943.0 ( -12.92 by residue)
QMean score : -0.007
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