Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | AMIPLFKVAVSPTALDRVAEVFASGYLGQGPRVAEFESALAARLGNPRVVSVHSGTSGLCLALRLLDAPEERDEVLSTPLTFEATNWAILADGRRITWVDVDPATLTMDLDDLERKISPATRAIIVVHWTGYPVDLDRLAGILDRAEREHGFRPAVIEDCAHAWGASYRGVPLGSHGNMCVFSFQAL-HLTCGDGGLLTLPGDELHERAMLRRFYGIDRTADRLRGA-YDVAEWGLKWHMTDLNAAIGLANLETVDEQLRLHRENAAFYDKELTGVPGLELLQRSPDREGSFYVYDVKVDD------RPAFHRKMEAAGIMAGLVSRRNDEHSCVAHLRT---------SLPGLDSVYDRMVSLPVGWWLTEQDREHVVATIRSGW |
1MDO Chain:A ((10-379)) | -FLPFSRPAMGAEELAAVKTVLDSGWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGI-GEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGER------YGIPVIEDAAHATGTSYKGRHIGARGT-AIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVD-------QAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGL-------HFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITAL---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1MDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -222913 for 3024 contacts (-73.7/contact) +
2D Compatibility (PS) -36982 + (NN) -15448 + (LL) 1320
1D Compatibility (HY) -18400 + (ID) 5750
Total energy: -298173.0 ( -98.60 by residue)
QMean score : 0.477
|
|
|