Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GFDPEKAQCCLVENGQILTHGSGGKGYGLASTGVTSGCYQWKFYIVKENRGNEGTC-VGVSRWPVHDFNHRT----TSDMWLYRAYSGNLYHNG--EQTLTLSSFTQGD--FIT-----CVLDMEARTISFGKNGEEPKLAFEDVDAAELYPCVMFYSSNPGEKVKICDMQMR
2JK9 Chain:A ((70-192))
-------------------------------VGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLKGKKLYPVV-------------------
General information:
TITO was launched using:
RESULT:
Template:
2JK9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60440 for 689 contacts (-87.7/contact) +
2D Compatibility (PS) -11946 + (NN) -4740 + (LL) 1892
1D Compatibility (HY) -7600 + (ID) 1650
Total energy: -84484.0 ( -122.62 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_2JK9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JK9-query.scw
PDB file :
Tito_Scwrl_2JK9.pdb
: