Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GHMGSPVSYYFSYADGGTSHTEYPDDSSAGSFI----LDITSYKKTGNSTKALSWNASGDSWIHVNGSSVSYDENPAKERRTGLVTLKQDESGKTLSLKIVQPGKTSID
2PQS Chain:A ((82-126))
GHIQYVAAYRVAYGDDGVTWTEYKDPGASESKIFPGNMDNNSHKK----------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2PQS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2286 for 143 contacts (16.0/contact) +
2D Compatibility (PS) -4478 + (NN) -3574 + (LL) 2372
1D Compatibility (HY) -800 + (ID) 800
Total energy: -4994.0 ( -34.92 by residue)
QMean score : 0.091
(partial model without unconserved sides chains):
PDB file :
Tito_2PQS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PQS-query.scw
PDB file :
Tito_Scwrl_2PQS.pdb
: