Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGDHAWSFLKDFLAGGVAAAVSKTAVAPIERVKLLLQVQ-HASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQLFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKGAAQREFHGLGDCIIKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIFV-SWMIAQSVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGAKAFFKGAWSNVLRGMGGAFVLVLYDEIKKYV |
| 4C9H Chain:A ((22-309)) | ------NFLIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQGTLDRKYAGILDCFKRTATQEGVISFWRGNTANVIRYFPTQALNFAFKDKIKAMF--GFKKEEGYAKWFAGNLASGGAAGALSLLFVYSLDYARTRLAADS------ARQFNGLIDVYKKTLKSDGVAGLYRGFLPSVVGIVVYRGLYFGMYDSLK------------LASFLLGWVVTTGASTCSYPLDTVRRRMMMTSGQA---VKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAGAGVISMYDQLQMIL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C9H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -80406 for 1993 contacts (-40.3/contact) +
2D Compatibility (PS) -27212 + (NN) 3949 + (LL) 816
1D Compatibility (HY) -29200 + (ID) 7750
Total energy: -139803.0 ( -70.15 by residue)
QMean score : 0.238
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