Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQHAS-KQIAADKQYKGIVDCIVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADV--GKSGTEREFRGLGDCLVKITKSDGIRGLYQGFSVSVQGIIIYRAAYFGVYDTAKGMLPDPKNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIFRDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKVI
4C9J Chain:A ((25-316))-----TNFAINFLMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKYSGIVDCFKRTAKQEGLISFWRGNTANVIRYFPTQALNFAFKDKIKLMF--GFKKEEGYGKWFAGNLASGGAAGALSLLFVYSLDFARTRLAADAKS-----ARQFNGLTDVYKKTLKSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSLK--------------FLLGWVVTTGASTCSYPLDTVRRRMMMTSGQA---VKYNGAIDCLKKIVASEGVGSLFKGCGANILRSVAGAGVISMYDQLQMIL


General information:
TITO was launched using:
RESULT:

Template: 4C9J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89659 for 2022 contacts (-44.3/contact) +
2D Compatibility (PS) -27513 + (NN) 3596 + (LL) 768
1D Compatibility (HY) -28400 + (ID) 7800
Total energy: -149008.0 ( -73.69 by residue)
QMean score : 0.212

(partial model without unconserved sides chains):
PDB file : Tito_4C9J.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4C9J-query.scw
PDB file : Tito_Scwrl_4C9J.pdb: