Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGDTGLRKRREDEKSIQSQEPKTTSLQKELGLISGISIIVGTIIGSGIFVSPKSVLSNTEAVGPCLIIWAACGVLATLG-ALCFAELGTMITKSGGEYPYLMEAYGPIPAY---LFSWASLIVIKPTSFAIICLSFSEYVCAPFYVGCKPPQIV-VKCLAAAAILFISTVNSLSVRLGSYVQNIFTAAKLV-IVAIIIISGLVLLAQGNTKNFDNSFEGAQLSVGAISLAFYNGLWAYDGWNQLNYITEELRNPYRNLPLAIIIGIPLVTACYILMNVSYFTVMTATELLQS-----QAVAVTFGDRVLYPASWIVPLFVAFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVRRLTPAPAIIFYGIIATIYIIPGDINSLVNYFSFAAWLFYGLTILGLIVMRFTRKELERPIKVPVVIPVLMTLISVFLVLAPIISKPTWEYLYCVLFILSGLLFYFLFVHYKFGWAQKISKPITMHLQMLMEVVPPEEDPE |
| 3L1L Chain:A ((8-337)) | ---------------------------HKVGLIPVTLMVSGAIMGSGVFLLP----ANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACW-IGNIAMVVIGVGYLSY----FFPILKDPWVLTITCVVVLWIFVL--LNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMA--------------AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDT----AGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNPYPLDA------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3L1L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -269522 for 2750 contacts (-98.0/contact) +
2D Compatibility (PS) -30816 + (NN) 5744 + (LL) 4464
1D Compatibility (HY) -28000 + (ID) 3900
Total energy: -322030.0 ( -117.10 by residue)
QMean score : 0.234
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