Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAMHFIFSDTAVLLFDFWSVHSPAGMALSVLVLLLLAVLYEGIKVGKAKLLNQVLVNLP--TSISQQTIAETDGDSAGSDSFPVGRTHHRWYLCHFGQSLIHVIQVVIGYFIMLAVMSYNTWIFLGVVLGSAVGYYLAYPLLSTA
4JKV Chain:A ((275-345))
---------------------------------------------GKTSYFHLLTWSLPFVLTVAILAVAQVDGDSVSGICF-VGYKNYR-YRAGFVLAPIGLVLIVGGYFLIRGVMTLFSIKSNHPGLLSEKAASKINETMLRL
General information:
TITO was launched using:
RESULT:
Template:
4JKV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13904 for 334 contacts (-41.6/contact) +
2D Compatibility (PS) -6907 + (NN) 266 + (LL) 4840
1D Compatibility (HY) -6400 + (ID) 1100
Total energy: -23205.0 ( -69.48 by residue)
QMean score : 0.000
(partial model without unconserved sides chains):
PDB file :
Tito_4JKV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JKV-query.scw
PDB file :
Tito_Scwrl_4JKV.pdb
: