Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDFLMSGLAACGACVFTNPLEVVKTRMQLQGELQAPGTYQRHYRNVFHAFITIGKVDGLAALQKGLAPALLYQF--------LMNGIRLGTYGLAEAGGYLHTAEGTHSPARSAAAGAMAGVMGAYLGSPIYMVKTHLQAQAASEIAVGHQYKHQGMFQALTEIGQK----HGLVGLWRGALGGLPRVIVGSSTQLCTFSSTKDLLSQWEIFPPQSWKLALVAAMMSGIAVVLAMA----PFDVACTRLYNQPTDAQGKGLMYRGILDALLQTARTEGIFGMYKGIGASYFR-LGPHTILSLFFWDQLRSLYYTDTK |
4C9Q Chain:A ((29-317)) | INFLMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKYSGIVDCFKRTAKQEGLISFWRGNTANVIRYFPTQALNFAFKDKIKL-MFGFKKE-GYGKWFAG------NLASGGAAGALSLLFVYSLDFARTRLAADAKS-----AR-----QFNGLTDVYKKTLKSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSLKPL---------------FLASFLLGWVVTTGASTCSYPLDTVRRRMMM----TSGQAVKYNGAIDCLKKIVASEGVGSLFKGCGANILRSVAGAGVISM--YDQLQMILFGK-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C9Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91286 for 1871 contacts (-48.8/contact) +
2D Compatibility (PS) -26485 + (NN) 240 + (LL) 1860
1D Compatibility (HY) -17600 + (ID) 3650
Total energy: -136921.0 ( -73.18 by residue)
QMean score : 0.179
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