Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEALGDLEGPRAPGGDDPAGSAGETPGWLSREQVFVLISAASVNLGSMMCYSILGPFFPKEAEKKGASN---TIIGMIFGCFALFELLASLVFGNYLVHIGAKFMFVAGMFVSGGVTILFGVLDRVPDGPVFIAMCFLVRVMDAVSFAAAMTASSSILAKAF-PNNVATVLGSLETFSGLGLILGPPVGGFLYQSFGYEVPFIVLGCVVLLMVPLNMYILPNYESDPGEHSFWKLIALPKVGLIAFVINSLSSCFGFLDPTLSLFVLEKFNLPAGYVGLVFLGMALSYAISSPLFGLLSDKRPPLRKWLLVFGNLITAGCYMLLGPVPILHIKSQLWLLVLILVVSGLSAGMSIIPTFPEILSCAHENGFEEGLSTLGLVSGLFSAMWSIGAFMGPTLGGFLYEKIGFEWAAAIQGLWALISGLAMGLFYLLEYSRRKRSKSQNILSTEEERTTLLPNET |
4K7J Chain:A ((26-375)) | ----GLLTDY---------GNASASP-WMKKLQSVAQGSGETFRILQIGDSHTAGDFFTDSLRKRLQKTWGDGGIGWVYPANVKGQRMAAVRHNGNWQSLTSRNN--TGDFPLGGILAHTG-----SGGSMTLTA----------SDGIASKQRVSLFAKPLLAEQTLTVNGNTVSANGGG-----------WQVLDTGAA---LPLTIHTEMPWDIGFI-NIENPAGG------ITVSAMGINGAQLTQWSKWRAD----------RMNDLAQTGADLVILSYGTNEAFNNNI--DIADTEQKWLDTVRQIRDSLPAAGILIIGAPESLK--------------NTLGVCGTRPVRLTEVQQMQRRVARQGQ-----------TMFWSWQNAMGGI----------CSMKNWLNQGWAAKDGVHFS-------AKGYRRAAEMLADSLEELVRSA---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4K7J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -300733 for 3076 contacts (-97.8/contact) +
2D Compatibility (PS) -36255 + (NN) 5305 + (LL) 8456
1D Compatibility (HY) -1600 + (ID) 3050
Total energy: -327877.0 ( -106.59 by residue)
QMean score : 0.167
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