Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMVMKRPSLRQFSWLLGGSLLLGALFWLWLAVQQQEATLAIRPVGQGIGMPDGFSVWHHLDANGIRFKSITP--------QKDGLLIKFDSTAQGAAAKEVLGRALPHGYIIALLEDDNSPTAWLSRLRDAPHRLG
3MDF Chain:A ((3-70))
---------------------------------TTKRVLYVGGLAEEVDD---KVLHAAFIPFG-DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3MDF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23988 for 375 contacts (-64.0/contact) +
2D Compatibility (PS) -6541 + (NN) -1249 + (LL) 4752
1D Compatibility (HY) -2800 + (ID) 350
Total energy: -30176.0 ( -80.47 by residue)
QMean score : 0.207
(partial model without unconserved sides chains):
PDB file :
Tito_3MDF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MDF-query.scw
PDB file :
Tito_Scwrl_3MDF.pdb
: