Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------------RKVDYSTFLQEVNNDQVREARI---NGREINVTKKDSN----RYTTYIPVQDPKLLDNLLTK-----NVKVV-GE
2JOQ Chain:A ((1-91))
QGHMPSDSKKPTIIYPCLWDYRVIMTTKDTSTLKELLETYQRPFKLEFKNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQTLGS
General information:
TITO was launched using:
RESULT:
Template:
2JOQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4837 for 337 contacts (-14.4/contact) +
2D Compatibility (PS) -6840 + (NN) -1716 + (LL) 0
1D Compatibility (HY) -2400 + (ID) 400
Total energy: -16193.0 ( -48.05 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_2JOQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JOQ-query.scw
PDB file :
Tito_Scwrl_2JOQ.pdb
: