Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---FEKCGKRVDRLDQRRSKLRVVGGHP---GNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSGSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNIK--HRGRVRESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRLGHHHHHH
1L4D Chain:A ((1-249))
APSFD-CGKPQVEP--KKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSP-RPSSYKVILGA--HQEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRNN------
General information:
TITO was launched using:
RESULT:
Template:
1L4D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161585 for 2099 contacts (-77.0/contact) +
2D Compatibility (PS) -25953 + (NN) -10573 + (LL) 888
1D Compatibility (HY) -18400 + (ID) 4900
Total energy: -220523.0 ( -105.06 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_1L4D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L4D-query.scw
PDB file :
Tito_Scwrl_1L4D.pdb
: