Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | AMIPLFKVAVSPTALDRVAEVFASGYLG-----QGPR--VAEFESALAARLGNPRVVSVHSGTSGLCLALRLLDAPEERDEVLSTPLTFEATNWAILADGRRITWVDVDPATLTMDLDDLERKISPATRAIIVVHWTGYPVDLDRLAGILDRAEREHGFRPAVIEDCAHAWGASYRGVPLGSHGNMCVFSFQAL-HLTCGDGGLLTLPGDELHERAMLRRFYGIDRTADRL---RGAYDV----AEWGLKWHMTDLNAAIGLANLETVDEQLRLHRENAAFYDKELTGVPGLELLQRSPD-REGSFYVYDVKVD-------DRPAFHRKMEAA-GI---MAGLVSRRNDEHSCVAHL-----------------RTSLPGLDSVYDRMVSLPVGWWL-TEQDREHVVATIRSGW |
| 2C81 Chain:A ((10-411)) | -----EWPQHSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGI-GEGDEVIVPSLTWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPVHLFGSMANMDEINEIAQE----HNL--FVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2C81.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202787 for 3118 contacts (-65.0/contact) +
2D Compatibility (PS) -39723 + (NN) -24202 + (LL) 864
1D Compatibility (HY) -16400 + (ID) 4350
Total energy: -286598.0 ( -91.92 by residue)
QMean score : 0.447
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