Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKLYTTLLIACLAAGFTACNDDDCEDLHLGNLAHYPNVLKGTFPTESQVLELGETLEITPELLNPEGATYSWLVNGKEYSTEPTFSYKIDNPCRADLSCIIKNKYGKVEMSTSFSSNHNFSKGFFYVADGTFNFYDTEKKTAYQDCYASLNAGKTLGIGNYDSANIIHSNGKFYLLVGTS-TSNRDHFYIVDAKTLYYENSA-------VVGANLSGLTILNEQYGLVTG--DG-IRRIDLKSLNNVRIKNERLLCFYNSIIYNGKVLSNDTYKDESKVKYYDVNELIAAKEGEAPAVTELDIIQK------QKINFVLAKDGNVYTLESADNGCNIVKIKNDFTLEKVFANFQPAKGPYHSSPTIGMVASETENIIYLVSTD-----------GAIYKYILGDSDSLKAPFIAAESGVSITAPLQLNQQSGELYVTYTEERKDESKIVVYSKDG-KVL--HTVDCGESVPSQILFNN |
| 3DSM Chain:A ((2-275)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI-RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQ--IWDYRIFIINPK---------TYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWS-YQNRILKIDTETDKVVDELTIGI-------Q-PTSLVMD-KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK--FKL-GDWPSEVQLNGTRDTLYWIN-------NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVN- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DSM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -85000 for 1867 contacts (-45.5/contact) +
2D Compatibility (PS) -26295 + (NN) -4430 + (LL) 10112
1D Compatibility (HY) -9200 + (ID) 1600
Total energy: -116413.0 ( -62.35 by residue)
QMean score : 0.189
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