Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GFDPE-KAQCCLVENGQ-ILTHGS---GGKGYGLASTGVTSGCYQWKFYIVKENRGNEGTCVGVSRW--PVHDFNH----RTTSDMWLYRAYSGNLYHNGEQT----LT-----LSSFTQGDFITCVLDMEARTISFGKNGEEPKLAFEDVDAAELYPCVMFYSSNPGEKVKICDMQMR
2JK9 Chain:A ((35-206))
-WNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTHA-VVGVATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLKGKKLYPVVSAVWGHCEIRMRYL-----
General information:
TITO was launched using:
RESULT:
Template:
2JK9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71384 for 1160 contacts (-61.5/contact) +
2D Compatibility (PS) -16271 + (NN) -6420 + (LL) 440
1D Compatibility (HY) -9600 + (ID) 1650
Total energy: -104885.0 ( -90.42 by residue)
QMean score : 0.374
(partial model without unconserved sides chains):
PDB file :
Tito_2JK9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JK9-query.scw
PDB file :
Tito_Scwrl_2JK9.pdb
: