Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVGYDPKPDGRNNTKFQVAVAGSVSGLVTRALISPFDVIKIRFQLQHERLSRSDPSAKYHGILQASRQILQEEGPTAFWKGHVPAQILSIGYGAVQFLSFEMLTELVHRGSVYDAREFSVHFVCGGLAACMATLTVHPVDVL----RTRFAAQ--------GEP------KVYNTLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPY--AGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEHARAAFGQVRRYKGLMDCAKQVLQKEGALGFFKGLSPSLLK---AALSTGFMFFSYEFFCNVFHCMNRTASQR--------- |
2IVN Chain:A ((1-325)) | --------------MLALGIEGTAHTLGIGIVSEDKVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFSQGPGLGPAL-RVVATAARALAVKYRKPIVGVNHCIAHVEITKMFGVKDPVGLYVSGGNTQVLALEGGRYRVFGETLDIGIGNAIDVFARELGLGF-PGGPKVEKLAEKGEKYIELPYAVKGMDLS-FSGLLTEAIRKYRSGKYRVEDLAYSFQETAFAALVEVTERAVAHTEKD--------EVVLVGGVAANNRLREMLRIMTEDRGIKFFV--PPYDLCRDNGAMIAYTGLRMYKAGISFRLEETIVKQKFRTDEVEIVWH |
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General information:
TITO was launched using:
| RESULT:
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Template: 2IVN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -143228 for 2525 contacts (-56.7/contact) +
2D Compatibility (PS) -29868 + (NN) -2717 + (LL) 216
1D Compatibility (HY) 800 + (ID) 2000
Total energy: -176797.0 ( -70.02 by residue)
QMean score : 0.258
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