Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEAHNASAPFNFTLPPNFGKRPTDLALSVILVFMLFFIMLSLGCTMEFSKIKAHLWKPKGLAIALVAQYGIMPLTAFVLGKVFRLKNIEALAILVCGCSPGGNLSNVFSLAMKGDMNLSIVMTTCSTFCALGMMPLLLYIYSRGIYDGDLKDKVPYKGIVISLVLVLIPCTIGIVLKSKRPQYMRYVIKGG-MIIILLCSVAVTVLSAINVGKSIMFAMTPLLIATSSLMPFIGFLLGYVLSALFCLNGRCRRTVSMETGCQNVQLCSTILNVAFPPEVIGPLFFFPLLYMIFQLGEGLLLIAIFWCYEKFKTPKDKTKMIYTAATTEETIPGALGNGTYKGEDCSPCTA |
4P4M Chain:A ((92-378)) | --KPKLKAIQELTQVHGFGPRAAAALFDREGIFTVDELLQKADSIPSLTDQQRVGIKYFYDINEKIPMQESVLHENYLREKCMEVLG-KDFSILICGSYRRRHP---FS----GD---------------------VDAILSRTLDAPPLSEPVAATGVLGHFVEFLES-----------LKYLEATMAQGPLKYMGMGRLPPRINTKVYKARRVDIRLIETKSVPTAMLTFTG---------------------------------SKNFNVIMRQAAISKGYLLNE-YGLFKLGTPEEARGK-NAGEELGVPKDELEDKRVEVRSEQDVFDVLGMPYAKPENRDP--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P4M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -217210 for 1996 contacts (-108.8/contact) +
2D Compatibility (PS) -27838 + (NN) -829 + (LL) 7096
1D Compatibility (HY) -1200 + (ID) 2300
Total energy: -242281.0 ( -121.38 by residue)
QMean score : 0.224
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