Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------------------------------------------------------------------------------------------------------------------MYMKKLKFITLTLAIIITLPMLQSCLDDNDHQSRSLVISTINQISEDS-------------KEFYFTLDNGKTMFPSNSQAWGGEKFENGQRAFVIFNELEQPVNG--------------YDYNIQVRDITK---VLTKEIVTMDDEENTEEKIGDD-------KINATYMWISKDKKYLTIEFQYYSTHSEDKKHFLNLVINNKEADSAA----------ENEDNTDDEYINL------EFRHNSERDSPDHLGEGYVSFK-------LDKIEEQIEGKKGLNIRVRTLYDGIKNYKVQF--P----------------------- |
| 1JS3 Chain:A ((1-476)) | MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWV-KRRTDLTGAFKSGL--ITDYRHWQ--LPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHL-VPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JS3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 20742 for 1622 contacts (12.8/contact) +
2D Compatibility (PS) -25397 + (NN) -5254 + (LL) 264
1D Compatibility (HY) -4400 + (ID) 1550
Total energy: -15595.0 ( -9.61 by residue)
QMean score : 0.215
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