Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------------------------------------------------------------------------MIFLAILDLKSLV-------LNAINYWGPKNNNGIQGGDFGYPISE------KQIDTSIITSTHPR--------------------LIPHDLTIPQNLE----TIFTTTQVLTNNTDLQQSQTVSFAKKTTTTTSTSTTNGWTEGGKISDTLEEKVSVSIPFIGEGGGKNSTTIEANFAHNSSTTTFQQASTDIEWNISQPVLVPPRKQVVATLVIMGGNFTIPMDLMTTIDSTEHYSGY---------------PILTWISSPDNSYNGPFMSWYFANWPNLPSGFGPLN-----SDNTVTYTGSVVSQVSAGVYATVRFDQYDIHNLRTIEKTWYARHATLHNGKKIS----------INNV-TEMAPTSPIKTN |
| 1PRE Chain:A ((2-470)) | EPVYPDQLRLFSLGQGVCGDKYRPVNREEAQSVKSNIVGMMGQWQISGLANGWVIMGPGYNGEIKPGTASNTWCYPTNPVTGEIPTLSALDIPDGDEVDVQWRLVHDSANFIKPTSYLAHYLGYAWVGGNHSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRCGDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDP--QSGYDVTLRYDTATNWSKTNT--YGLSEKVTTKNKFKWPL------VGETELSIEIAANQSWASQNGGSTTTSLSQSVRPT----VPARSKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRWGGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWDKRYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVRAGITGDFSAESQFAGNIEI--GAPVPLGLRLEIPLDAQELSGLGFNNVSLSVTPAANQ--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PRE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 4920 for 1952 contacts (2.5/contact) +
2D Compatibility (PS) -31613 + (NN) -14855 + (LL) 680
1D Compatibility (HY) -4000 + (ID) 2250
Total energy: -47118.0 ( -24.14 by residue)
QMean score : 0.130
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