Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVKKTVRF-GEQAAVPAIGLGTWYMGEHAAQRQQEVAALRAGIDHGLTVIDTAEMYADGGAEEVVGQAIRGLRDRVVLVSKVYPWHAGKAAMHRACENSLRRLQTDYLDMYLLHWRGD-IPLQETVEAMEKLVAEGKIRRWGVSNLDIEDMQALWRTADGEHCATNQVLYHLASRGIEYDLLPWCQQHSLPVMAYCPLAQAGRLRDGL---------FQ---HSDIINMANARGITVAQLLLAWVIRHPGV-LAIPKAASIEHVVQNAAALD-IVLSGEELAQLDRLYPPPQRKNRLDMV |
| 1YNP Chain:A ((21-309)) | --MKKRQLGTSDLHVSELGFGCMSLGTD---ETKARRIMDEVLELGINYLDTADLYNQGLNEQFVGKALKGRRQDIILATKV-----SKAYIKEAVKDSLRRLQTDYIDLYQLHGGTIDDPIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYLKRS---NIVSIMMQYSILDRRPE-EWFPLIQEHGVSVVVRGPVARG-LLSRRPLPEGEGYLNYRYDELKLLRESL-PTDRPLHELALQYCLAHDVVATVAAGASSIDQVKANVQAVEATPLTAEERQHIQKLAKA---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YNP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202371 for 2128 contacts (-95.1/contact) +
2D Compatibility (PS) -27753 + (NN) -13486 + (LL) 1464
1D Compatibility (HY) -16800 + (ID) 3650
Total energy: -262596.0 ( -123.40 by residue)
QMean score : 0.475
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