Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNLLCLLALLLCTTVFAQPQQVVVGVSGNGYVTRQQDGARITQRGVTHWTNPKSIVSIYFYLHQPTTADLSLYAK---GHSEIKVSYGKK----GFKVNLQSN----DFTKVPVGSIDIRQAGYVRIDLQGVSKSGEGFGEIKQLIADNVTGKSNYVKDFSDYWGRRGPSVHLGYALPEGDTEWFYNEITVPKEGETMHSYYMAAGFGEGYFGMQYNSPTERRILFSVWSPFDTQNPKEIPDDQKIKLLRQGKDVHIGEFGNEGSGGQSYLKYPWKAGNTYKFLMQIRPDGNGNTTYTAYFYATDEKEWKLIASFLRPKTNTWYKRPHSFLENFSPEQGYLSREVFFGNQWARSKEGKWSRLTDATFTHDATASAQVRLDYQGGNTKDNRFYLKMGGFFNESVPMGTKFYCKPTGKEPEIDWEALKQL |
| 2CDP Chain:A ((60-159)) | -----------------------------------------------INYVNQGDYADYTIAVAQAGNYTISYQAGSGVTGGSIEFLVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYLS-AGTHQVRLHGAGSN-NWQWNLDKFTLS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CDP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -39176 for 609 contacts (-64.3/contact) +
2D Compatibility (PS) -9450 + (NN) -2246 + (LL) 16456
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -37916.0 ( -62.26 by residue)
QMean score : 0.108
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