Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | AMIPLFKVAVSPTALDRVAEVFASGYLGQGPRVAEFESALAARLGNPRVVSVHSGTSGLCLALRLL--------DAPEERDEVLSTPLTFEATNWAILADGRRITWVDVDPATLTMDLDDLERKISPATRAIIVVHWTGYPVDLDRLAGILDRAEREHGFRPAVIEDCAHAWGASYRGVPLGSHGNMCVFSFQA-LHLTCGDGGLLTLPGDELHERAMLRRFYGIDRT-----ADRLRGAYDVAEWGLKWHMTDLNAAIGLANLETVDEQLRLHRENAAFYDKELTGVPG-LELLQRSPDREGSFYVYDVKVD-----DRPAFHRKMEAAGIMAGLVSR-RNDEHSCVAHL----RTSLPGLDSVYDRMVSLPVGWWLTEQDREHVVATIRSGW |
| 3BB8 Chain:A ((33-433)) | -VVPPSGKVIGTKELQLMVEASLDGWLTTGRFNDAFEKKLGEYLGVPYVLTTTSGSSANLLALTALTSPKLGVRAL-KPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSDKTKAIMIAHTLGNLFDLAEVRRVADK----YNL--WLIEDCCDALGSTYDGKMAGTFGDIGTVSFYPAKHITMGEGGAVFTQSAELKSIIESFRDWGRDC-QLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERIEEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFF |
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General information:
TITO was launched using:
| RESULT:
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Template: 3BB8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -223369 for 3225 contacts (-69.3/contact) +
2D Compatibility (PS) -39877 + (NN) -20489 + (LL) 468
1D Compatibility (HY) -21600 + (ID) 4450
Total energy: -309317.0 ( -95.91 by residue)
QMean score : 0.453
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