Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
PYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDV-FTDVE---IFCDILEAANKRG--VFVCVLLDQGGVK-------LF-QEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFIISDWRFVLSGSYSFT---WLCGH-VHRNILSKFTGQAVELFDEEFRHLYASSKPVMGLKSP
1V0W Chain:A ((66-221))
-------------------RLLAKMTENIGNATRTVDISTLAPFPNGAFQDAIVAGLKESAAKGNKLKVRILVGAAP--HMNVIPSKYRDELTAKLG-----KAAENITLNVASM---TTSKTAFSWNHSKILVVDGQSALTGGINSWKDDYLDTTHPVSDVDLALTGPAAGSAGRYLDTLWT-----------
General information:
TITO was launched using:
RESULT:
Template:
1V0W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120452 for 967 contacts (-124.6/contact) +
2D Compatibility (PS) -15083 + (NN) -7113 + (LL) 2140
1D Compatibility (HY) -800 + (ID) 950
Total energy: -142258.0 ( -147.11 by residue)
QMean score : 0.321
(partial model without unconserved sides chains):
PDB file :
Tito_1V0W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V0W-query.scw
PDB file :
Tito_Scwrl_1V0W.pdb
: