Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MKKYLTIVIALVTLQSAFSQVISETFSSGRLNRKQKIGIYKPEKYTDRQAYPLIVVLNA-----ETLME---PVVSMVRYYEQFGEMPKCIVVGVYEPKQEDVTVVEEVGRPINESARFFEFVSAELVPYIQGKYPIADL--KGVIASEEAGFLANYYMLAEKKPTFNMIVSLNPVALPRMGEEF---SHALAAGVPNRLFYYMATADVENKVVYDKAIQFERAMRSAPVHESVEYHFVDFKG-SSVNAAKLQGIAQALDMCFDIYKPIGGKEFKTQMETLETGIYEYLENKYNTIYKQLGVKKVPILNDVMATYTAINSSQDWESLKKLAKYVESNGYLKTAMPNFFLAEYYEKIGDDKKALKTYQKAYTEPNIDFITGDLINERITHLQATKRKSKHTKVIEPIEPTEEVAPAQEEQNPTDESNQN |
| 1JJF Chain:A ((11-265)) | SLPTMPPSGYDQVRNGVPRGQVVNISYFSTATNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTNAAGP--------GIADGYENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPNTYPNERLFPDGGKAAREKLKLLFIACGTND--------SLIGFGQRVHEYCVANNINHVYWLIQGGGHDFNVWKPGLWNFLQMADE--AGLTRD------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JJF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -139944 for 2052 contacts (-68.2/contact) +
2D Compatibility (PS) -25589 + (NN) -9630 + (LL) 12556
1D Compatibility (HY) -8400 + (ID) 1900
Total energy: -172907.0 ( -84.26 by residue)
QMean score : 0.206
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