Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GFDPE-KAQCCLVENGQILTHGS---GGKGYGLASTGVTSGCYQWKFYIVKENRGNEGTCVGVSRW--PVHDFNH----RTTSDMWLYRAYSGNLYHNGEQT--L-T-----LSSFTQGDFITCVLDMEARTISFGKNGEEPKLAFEDVDAAELYPCVMFYSSNPGEKVKICDMQMR
3EMW Chain:A ((46-215))
-WNPKDCSENIEVKEGGLYFERRPVAQSTDGARGKRGYSRGLHAWEISWPLEQRGTHA-VVGVATALAPLQTDHYAALLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTYLGPAFRGLKGRTLYPAVSAVWGQCQVRIRYL-----
General information:
TITO was launched using:
RESULT:
Template:
3EMW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74334 for 1141 contacts (-65.1/contact) +
2D Compatibility (PS) -16497 + (NN) -7822 + (LL) 440
1D Compatibility (HY) -6400 + (ID) 1600
Total energy: -106213.0 ( -93.09 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_3EMW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EMW-query.scw
PDB file :
Tito_Scwrl_3EMW.pdb
: