Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------MAAEARVSRWYFGGLASCGAACCTHPLDLLKVHLQTQQEVKLRMTGMALRVVRTDGILALYSGLSASLC------RQMTYSLTRFAI-YETVRDRVAKGSQGPLPFHE--KVLLGSVSGLAGGFVGTPADLVNVRM-QNDVKLPQGQRR-----------NYAHALDGLYRVAREEGLR-----------RLFSG-------------------ATMASSRGALVTVGQLSCY--------DQAKQLVLSTGYLSDNIFTHFVASFIAGGCATFLCQPLDVLKTRLMNSKGEYQGVFHCAVETAKLGPLAFY--KGLVP-----------------AGIRLIPHTV-LTFVFLEQLRKNFGIKVPS--------------------------------------------------------- |
| 5A61 Chain:A ((2-430)) | AMAQEIELKFIVNHSAVEALRDHLNTLG------GEHHDPVQLLNIYYETPDN-WLRGHDMGLRIRGENGRYEMTMKVAGRVTGGLHQRPEYNVALSEPTLDLAQLPTEVWPNGELPADLASRVQPLFSTDFYREKWLVAVDDSRIEIALDQGEVKAGEFAEPICELELELLSGDTRAVLKLANQLVSQTGLRQGSLSKAARGYHLAQGNPAREIKPTTILHVAAKADVEQGLEAAFELALAQWQYHEELWVRGNDAAKEQVLAAIGLVRHALMLF-GGIVPRKASTHLRDLLTQCEATIASAVSAVTAVYSTETAMAKLALTEWLVSKAWQPFLDAKAQGKISDSFKRFADIHLSRHAAELKSVFCQPLGDRYHDQLPRLTRDIDSILLLAGYYDPVVAQAWLENWQGLRHAIATGQRIEIEHFRNEANNQEPFWL |
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General information:
TITO was launched using:
| RESULT:
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Template: 5A61.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -112478 for 1777 contacts (-63.3/contact) +
2D Compatibility (PS) -28524 + (NN) -2259 + (LL) 704
1D Compatibility (HY) -9600 + (ID) 2700
Total energy: -154857.0 ( -87.15 by residue)
QMean score : 0.183
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