Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSVRTLPLLFLNLG----GEMLYILD--QRLRAQNIPGDK-ARKDEWTEVDRKRVLNDIISTMFNRKFMEELFKPQELYSKKAL-RTVYERLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDTIKGFIRDSPTILQQVDETLRQLTEIYGGLSAGEFQLIRQTLLIFFQDLHIRVSMFLKDKVQNNNGRFVLPVSGPVPWGTEVPGLIRMFNNKGEEVKRIEFKHG-GNYVPAPKEGSFELYGDRVLKLGTNMYSVNQPVETHVSGSSKNLASWTQESIAPNPLAKEELNFLARLMGGMEIKKPSGPEPGFR----LNLFTTDEEEEQAALTRPEELSYEVINIQATQDQQRSEELARIMGEFEITEQP------RLSTSKGDDLLAMMDEL |
| 4OJV Chain:A ((1-369)) | MVVFEITILGANGGPTEYGTQCFILKPARTEDPELIAVDGGAGMYQLREMLVQGDDELVPSFYEHDREPIEFFIDSKLNIQKGLSKSLLQSLKRQGEHFESANTMKKTYEVFQ------------GITDYYITHPHLDHISGLVVNSPSIYEQEN---SKKKTIWG-LPHTIDVLQKHV----FNDL------IWPDLTAERSRKLKLKCLNPKE--------VQKCTIFPWDVIPFKVHHGIGVKTGAPVYSTFYIFRDRKSK---DCIIVCGDVEQDRRESEESLLEEFWSYVAENI----PLVHLKGILVECSCPLSSKPEQLYGHLSPIYLINELSNLNTLYNSSKGLSGLNVIVTHVKSTPAKRDPRLTILEELRFLAEERNLGDLRISIALEGHTLFL---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4OJV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 24472 for 2809 contacts (8.7/contact) +
2D Compatibility (PS) -35845 + (NN) -3653 + (LL) 4040
1D Compatibility (HY) -16400 + (ID) 3600
Total energy: -30986.0 ( -11.03 by residue)
QMean score : 0.153
|
|
|