Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------------MRPQDSTGVAELQEPGLPLTDDAPPGATEEPAAAEAAGAPDRGRCWLCLSSPCCSRTEPEAKKKAPCPGLGLFYTLLSAFLFSVGSLFVKKVQDVHAVEISAFRCVFQMLVVIPCLIYRKTGFIGPKGQRIFLILRGVLGSTAMMLIYYAYQTMSLADATVITFSSPVFTSIFAWICLKEKYSPWDALFTVFTITGVILIVRPPF--LFGSDTSGMEESYSGHLK--GTFAAIGSAVFAASTLVILRKMGKSVDYFL------SIWYYVVLGLVESVIILSVLGEWSLPYCGLDRLFLIFIGLFGLGGQIFITKALQIEKAGPVAIMKTMDVVFAFIFQIIFFNNVPTWWTVGGALCVVASNVGAAIRKWYQSSK |
| 3J4Q Chain:B ((9-394)) | GLTELLQGYTVEVLRQQPPDLVDFAVEYFTRLREARRQESDTFIVSPTTFHTQESSAVPVIEEDGESDSDSEDADLEVPVPSKFTRRVSVCAETFNPDEEEEDVVHPKTDEQRCRLQEACKDILLFKNLDQEQLSQVLDAMFEKIVKTDEHVIDQGDDGDNFYVIERG---------TYDILVTKDNQTRSVGQYDNRGSFGELALM----YNTPRAATIIATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEVSILIRSKTKSN------KNGGNQEVEIAHCH-KGQYFGELALVTNKPRAASAYAVGDVKCLVMDVQAFERLLGP---CMDIMKRNISHYEEQLVKMFGSN- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3J4Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -265335 for 2092 contacts (-126.8/contact) +
2D Compatibility (PS) -35143 + (NN) 3763 + (LL) 2272
1D Compatibility (HY) 2000 + (ID) 2150
Total energy: -294593.0 ( -140.82 by residue)
QMean score : 0.233
|
|
|