Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMVMKRPSLRQFSWLLGGSLLLGALFWLWLAVQQQEATLAIRPVGQGIGMPDGFSVWHHLDANGIRFKSITPQKDGLLIKFDSTAQGAAAKEVLGRALPHGYIIALLEDDNSPTAWLSRLRDAPHRLG
2DGU Chain:A ((335-405))
---------------------------------AKVKVLFVRNLANTVTEE---ILEKAFSQFG-KLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF--------------------
General information:
TITO was launched using:
RESULT:
Template:
2DGU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44893 for 512 contacts (-87.7/contact) +
2D Compatibility (PS) -7507 + (NN) 873 + (LL) 4016
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -51311.0 ( -100.22 by residue)
QMean score : 0.234
(partial model without unconserved sides chains):
PDB file :
Tito_2DGU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DGU-query.scw
PDB file :
Tito_Scwrl_2DGU.pdb
: