Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMKLHLKYLWIVLVACTLTACMNGGGDLAGKWQLRQYQYADGTSEKVDSVFYNFQKGSFSAICLLKDGGLTTFFGNYSLKGAEISIILLPESVNDKNYDTYFGWPEGKCTFKVEDLS----YS-SLRLEYEGTKS--IFRKF---
1FNF Chain:? ((1142-1235))
--------------------------PLSPPTNLHLEANPDTGVLTV-----SWERST--------TPDIT-----------GYRITTTPTNGQQGNSLEEV-VHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPA
General information:
TITO was launched using:
RESULT:
Template:
1FNF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1893 for 566 contacts (-3.3/contact) +
2D Compatibility (PS) -8932 + (NN) -3331 + (LL) 3824
1D Compatibility (HY) -1200 + (ID) 700
Total energy: -12232.0 ( -21.61 by residue)
QMean score : 0.259
(partial model without unconserved sides chains):
PDB file :
Tito_1FNF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FNF-query.scw
PDB file :
Tito_Scwrl_1FNF.pdb
: