Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTASLEMAALLL--------DIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFRGQ--------VDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGRIELPSIPDGCVQNAHMFYIKLRDID--DRSALINFLKEAEIMAVFHY-IPLHGCPAGEHFGEF-HGEDRYTTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS |
| 3BB8 Chain:A ((35-433)) | --PPSGKVIGTKELQLMVEASLDGWL-TTGRFNDAFEKKLGEYLGVPYVLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSDKTKAIMIAHTLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTYDGKMAGTFGDIGTVSFYPAKHI-TMGEGGAVFTQSAELKSIIESFRDWGRDC------QLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERIEEFVEKRKANFKYLKDALQSC--ADFIELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFF- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3BB8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -251885 for 3271 contacts (-77.0/contact) +
2D Compatibility (PS) -40158 + (NN) -18355 + (LL) 984
1D Compatibility (HY) -14800 + (ID) 5600
Total energy: -329814.0 ( -100.83 by residue)
QMean score : 0.499
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