Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLPDIVNMYFDADSCNDTDALSETFAPDAVVEDE--GARHQGVVAILRWWVAAKKAA-SYVAEPLESTVDGDKALVRAKVSGRFPG------SPVTLTYSFTIKDGRIARLEIQ
3FF2 Chain:A ((2-114))
MSNLETAKAMIAAYNAQDVDTYVSYMTDDACEANYRGDVVREGKEGTRSGLAAAFARWPQNHAEIKDAQQVGTYVLMREHVTRGPATDGSPLVEPFDVVAVYSFEGDKCSRVE--
General information:
TITO was launched using:
RESULT:
Template:
3FF2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39120 for 749 contacts (-52.2/contact) +
2D Compatibility (PS) -11531 + (NN) -5038 + (LL) 324
1D Compatibility (HY) 800 + (ID) 900
Total energy: -55465.0 ( -74.05 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_3FF2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FF2-query.scw
PDB file :
Tito_Scwrl_3FF2.pdb
: