Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTSVWGKSILALVFTFMCSLAISAASPKDYLYDTKE-----ENGKIISKVVFLQENGLLNKQVRYEFQYN------------ENGKVSEKKAFRW---DRTNDEWVPFYQITYQYDDQSGEIKTNYGMWDKKKKNFSLNVQNMIIPSTNYEEIFS
1IM3 Chain:D ((1-95))
------------------------------PWFQIEDNRCYIDNGKLFARGSIV---GNMSR-FVFDPKADYGGVGENLYVHADDVEFVPGESLKWNVRNLDVMPIFETLALRLVLQGDVIWLRCVPEL---------------------------
General information:
TITO was launched using:
RESULT:
Template:
1IM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19721 for 438 contacts (-45.0/contact) +
2D Compatibility (PS) -8221 + (NN) -833 + (LL) 4536
1D Compatibility (HY) -4800 + (ID) 250
Total energy: -29289.0 ( -66.87 by residue)
QMean score : 0.260
(partial model without unconserved sides chains):
PDB file :
Tito_1IM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IM3-query.scw
PDB file :
Tito_Scwrl_1IM3.pdb
: