Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLLNTLVCIIGLTSFSSSAKLVNAEHLDALYQKVTVANKTELGLIHIYSEFPDYRWVKDPIEGVSAIDDVARAAIFYQRQYQATGSAADLEKVKSLVEFILYQRA-DNGYFYNFIYPDHSINKEYKTSVAEPNWWTWRALWALTQVYPTLVKTDNALAQRTRETIFATIDVIYKDFNFKQTRGEKEGVAV-PEWLP---HTAGDQASVLLMALSDAQALEAKPEIEKMMRSLAAGIMLMQVKDTSSP--VNGAFLSWQNL---------WHGYGNS---QAYALLVAGNRLGDRDMIKAAFNELDHFHPWLIS--NGLLNEFTVRQQGEKVTLIEQKKFSQIAYIIRPMVFANIKAWEISRDAVYLERAVDLSLWFFKNNPAQAQMYYPVTGIAFDGIDSATTVNKNS----GAESTIEALLTLQLIESIPDAKRMLESALEKRNIKQ |
| 3VW5 Chain:A ((9-316)) | -------------------------------------------------------------------------------------------ELTDHIIPFWNKLRDDENGGFYGYLSYGLELDKKAD----KGVILHSRILWFYSNAYMTLG--GDELLDNAKH----AYEFIKNNCI-DYEYGGVY-WMMDFEGKPADTMKHTYNIAFAIYALSSYYRASGDKEALALAYRLFEDIEKNTLYE-YGYREAFDRQWRLVDNEALSENGLKADKTMNAILHLIEAYTELYKADGNEKVADRLKFQLGQMRDIVYTPDTNALKVFF--DTAFNLVGDI-HSYGHD-IE---ATWLMDRACDVLGDEDLKKQFAEMDLKISH--NIQDIALE--DGALNNERD-KNEIDKTRVWWVQAEAVVGFINA------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VW5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -85396 for 2286 contacts (-37.4/contact) +
2D Compatibility (PS) -29823 + (NN) -12166 + (LL) 11404
1D Compatibility (HY) -2800 + (ID) 2000
Total energy: -120781.0 ( -52.84 by residue)
QMean score : 0.248
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