Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVLLLVFLSLTWLSASAQALVPITWTAYGLTFEAPKGILVEEDTEETFLLNNSR-----FYITIQSLDSDGMTKSDLKSVLKDYANDDGVKDQSAVQEFELPQFFGTYLKGSCETDHCLYA--CLMTKAAGSGFYISIIYSKEN-ENIAEKILKSFTMEE
3HLZ Chain:A ((14-132))
-------------------------------FSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISAFK-GNASYGKDAIRQELKE---------NDSASLVKIGTWDCAYSKEMFQEEGTYYTSHLWITGTGNIAFECSFTVPKGGSAKEAEEVIATLEA--
General information:
TITO was launched using:
RESULT:
Template:
3HLZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65392 for 735 contacts (-89.0/contact) +
2D Compatibility (PS) -12177 + (NN) -6490 + (LL) 3736
1D Compatibility (HY) -6000 + (ID) 1050
Total energy: -87373.0 ( -118.87 by residue)
QMean score : 0.253
(partial model without unconserved sides chains):
PDB file :
Tito_3HLZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HLZ-query.scw
PDB file :
Tito_Scwrl_3HLZ.pdb
: