Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
FEKCGKRVDRLDQRRSKLRVVGGHP--GNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSGSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNIKHRG--RVRESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRLGHHHHHH
1SHY Chain:A ((495-722))
-------------------VVNGIPTRTNIGWMVSLRY-RNKHICGGSLIKESWVLTARQCFPSR--DLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILT-------
General information:
TITO was launched using:
RESULT:
Template:
1SHY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -179317 for 1888 contacts (-95.0/contact) +
2D Compatibility (PS) -24478 + (NN) -12303 + (LL) 1740
1D Compatibility (HY) -17200 + (ID) 4950
Total energy: -236508.0 ( -125.27 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_1SHY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SHY-query.scw
PDB file :
Tito_Scwrl_1SHY.pdb
: