Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
PYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQ----VLVILMDVFTDVEIFCDILEAANKRGVFVCVLLDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFIISD---WRFVLSGSYSFTWLCGHVHRNILSKFTG-QAVELFDEEFRHLYASSKPVMGLKSP
2O8R Chain:A ((519-653))
-------------------AITNLIEREIENVKRGKRGYMLLKMNGLQDKNVITQLYRASE-AGVEIDLIVRGICC-------LVPDMP--QSRNIRVTRLVDM-----------YLEHSRIWCFHNGGKEEVFISSADWMKRNLYNRIETACPVLDPTLRREIIDILEIQLRDN---------
General information:
TITO was launched using:
RESULT:
Template:
2O8R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111654 for 909 contacts (-122.8/contact) +
2D Compatibility (PS) -14055 + (NN) -6598 + (LL) 3152
1D Compatibility (HY) -4800 + (ID) 650
Total energy: -134605.0 ( -148.08 by residue)
QMean score : 0.377
(partial model without unconserved sides chains):
PDB file :
Tito_2O8R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2O8R-query.scw
PDB file :
Tito_Scwrl_2O8R.pdb
: