Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------MKKYLTIVIALVTLQSAFSQVISETFSSGRLNRKQKIGIYKPEKYTDRQAYPLIVVLNA-----ETLME---PVVSMVRYYEQFGEMPKCIVVGVYEPKQEDVTVVEEVGRPINESARFFEFVSAELVPYIQGKYPIADLK------------GVIASEEAGFLANYYMLAEKKPTFNMIVSLNPVALP-----RMGEEFSHALAA-GV-PNRLFYYMATADVENKVVYDKAIQFERAMRSAP------VHESVEYHFVDFKGSSVN-AAKLQGIAQALDMCFDIYKPIGGKEFKTQMETLETGIYEYLENKYNTIYKQLGVKKVPILNDVMATYTAINSSQDWESLKKLAKYVESNGYLKTAMPNFFLAEYYEKIGDDKKALKTYQKAYTEPNIDFITGDLINERITHLQATKRKSKHTKVIEPIEPTEEVAPAQEEQNPTDESNQN |
| 1GKL Chain:A ((15-297)) | SFKYESAVQYRPAPDSYL------NPCPQAGRIVKETYTG--INGTKSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTF------------NGGNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGNSPQDKANSIAEAINRSGLSKREYFVFAATGSEDIA--YANMNPQIEAMKALPHFDYTSDFSKGNFYFLVAPGATHWWGYVRHYIYDALPYFFHELEHHHHHH----------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GKL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -136864 for 1978 contacts (-69.2/contact) +
2D Compatibility (PS) -25811 + (NN) -13112 + (LL) 13144
1D Compatibility (HY) -13600 + (ID) 1800
Total energy: -178043.0 ( -90.01 by residue)
QMean score : 0.240
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