Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GFDPE-KAQCCLVENGQILTHGS---GGKGYGLASTGVTSGCYQWKFYIVKENRGNEGTCVGVSRW--PVHDFNH----RTTSDMWLYRAYSGNLYHNGEQ--TLT------LSSFTQGDFITCVLDMEARTISFGKNGEEPKLAFEDVDAAELYPCVMFYSSNPGEKVKICDMQMR
2AFJ Chain:A ((48-217))
-WNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHA-VVGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLKGRTLYPSVSAVWGQCQVRIRYM-----
General information:
TITO was launched using:
RESULT:
Template:
2AFJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46272 for 1009 contacts (-45.9/contact) +
2D Compatibility (PS) -16497 + (NN) -10032 + (LL) 440
1D Compatibility (HY) -6400 + (ID) 1600
Total energy: -80361.0 ( -79.64 by residue)
QMean score : 0.291
(partial model without unconserved sides chains):
PDB file :
Tito_2AFJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AFJ-query.scw
PDB file :
Tito_Scwrl_2AFJ.pdb
: