Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------MGELPGSEGMWENCPL------GWVKKKASGTLAPLDFLLQRKRLWLWAS----EPVRPQPQGIHRFRE-A-RRQFCRMRGSRLTGGRKGFGSSGLRFGRGGF------------SEEVMPQPVLKA--------M-RCAEGAWWFSPDGPAGSAASIWP----------AEGAEGLPGQLGRDRLEVVYSVPDNVPGQNGSRRPL---VCKITGKCLSVCSEENAKAGGCSAFPLLLSQLGARMTGREHAHKGPELTTPDSGL-PRPPNPALA--GFRALAQHSPPLGTSTPSAVLLSAAT------------------------------------------------------- |
| 1VKP Chain:A ((5-376)) | RESPAEHGYYMPAEWDSHAQTWIGWPERQDNWRHNALPAQRVFAGVAKAISKFEPVTVCASPAQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGGSIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLG---VQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVVLLSWTDDETDPQYERSVEALSVLSNSIDARGRKIQVIKLYIPEPLYMTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAPQFGDPIRDKEAIRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPT |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VKP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -41116 for 1804 contacts (-22.8/contact) +
2D Compatibility (PS) -25370 + (NN) -1050 + (LL) 124
1D Compatibility (HY) -8400 + (ID) 1600
Total energy: -77412.0 ( -42.91 by residue)
QMean score : 0.040
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