Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAMHFIFSDTAVLLFDFWSVHSPAGMALSVLVLLLLAVLYEGIKVGKAKLLNQVLVNLPTSISQQTIAETDGDSAGSDSFPVGRTHHRWYLCHFGQSLIHVIQVVIGYFIM----LAVMSYNTWIFL--GVVLGSAVGYYLAYPLLSTA-
4DFC Chain:B ((128-250))
------MASTVSQMVDN-VLSQPEGKR-----LMLLAPIIKERKGEHTKTLENLASQ------GYIRARIDGEVCDLSDPP-----------KLELQKKHTIEVVVDRFKVRLTQRLAESFETALELSGGTAVVADMDDPKAEELLFSAN
General information:
TITO was launched using:
RESULT:
Template:
4DFC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86781 for 791 contacts (-109.7/contact) +
2D Compatibility (PS) -12441 + (NN) -6949 + (LL) 2880
1D Compatibility (HY) 800 + (ID) 1400
Total energy: -103891.0 ( -131.34 by residue)
QMean score : 0.201
(partial model without unconserved sides chains):
PDB file :
Tito_4DFC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DFC-query.scw
PDB file :
Tito_Scwrl_4DFC.pdb
: