Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ------MALDFLAGCAGGVAGVLVGHPFDTVKVRLQVQSVEKPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQFLAGAAAGA--IQCVICCPMELAKTRLQLQDAG-PARTYKGSLDCLAQIYG--------HEGLRGVNRGMVSTL--LRETPSFGVYFLTYDALTRALGCEPGDRLLVPKLLLAG-----GTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRG---------------ILDCVHQSYRAEGWRVFTRGLASTLLRAFPV-----NAATFAT------------VTVVLTYARG---EEAGPEGEAVP-AAPAGPALAQPSSL- |
3ZPJ Chain:A ((1-356)) | MTTLEEINLLVERGYYEEALAKVYEIEDPIEQVQVLTKIVVTIYQHDGPMEWIPSIMEDAMYIAKK------LRDPANKAVAYSIIASTLAIMEYEEDAMDFFNRAIDEANEIESPIEKGMVLSTLAYHLAIAGYPDNALEIFNIAFDTIIGAETSYTHKVDGILRIGDLLEKAGDTLPSNEAMDFYKMAFDIFDK-LHVNQRAAIVEKKIELAKTVYDVGLPQIRAALLKGKNHYALAIIKKK-YSGVMRLIGELEVALWMKRVNNMEYLDVVDKAFECCESPRFTDVNVQHIARLLTELGNLRRALKFAKEIQNIHKRSEALKAIALELVRRKKFEEVKKIIESIPDPKIREEALNEIGTIE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ZPJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -108563 for 2180 contacts (-49.8/contact) +
2D Compatibility (PS) -30474 + (NN) -2576 + (LL) -188
1D Compatibility (HY) -11200 + (ID) 2650
Total energy: -155651.0 ( -71.40 by residue)
QMean score : 0.220
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