Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMVMKRPSLRQFSWLLGGSLLLGALFWLWLAVQQQEATLAIRPVGQGIGMPDGFSVWHHLDANGIRFKSITP----QKDGLLIKFDSTAQGAAAKEVLGRALPHGYIIALLEDDNSPTAWLSRLRDAPHRLG
2JVR Chain:A ((25-103))
--------------------------------PAKRYRITMKNLPEGCSW---QDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD------------------
General information:
TITO was launched using:
RESULT:
Template:
2JVR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53764 for 561 contacts (-95.8/contact) +
2D Compatibility (PS) -8267 + (NN) -3398 + (LL) 3572
1D Compatibility (HY) -800 + (ID) 550
Total energy: -63207.0 ( -112.67 by residue)
QMean score : 0.199
(partial model without unconserved sides chains):
PDB file :
Tito_2JVR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JVR-query.scw
PDB file :
Tito_Scwrl_2JVR.pdb
: