Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRALSLLLALCLCLSLMPAASASVVESTVQVGPYTFEIWFDGTATLTRYDESLAGSTYADIPASVTDENGQEYPVTVIGEKAFEET-NITGVTVPDSVISIGRLAFAYCNSLSDVKLSENLIYINELAFASCDALKEITIPASVEKMD-NPFRWSNALDTVYMEGMVAPE
4H09 Chain:A ((205-294))
----------------------------------------------------------------------------VKTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMD------
General information:
TITO was launched using:
RESULT:
Template:
4H09.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79395 for 628 contacts (-126.4/contact) +
2D Compatibility (PS) -8705 + (NN) 1918 + (LL) 5672
1D Compatibility (HY) -8400 + (ID) 1000
Total energy: -89910.0 ( -143.17 by residue)
QMean score : 0.240
(partial model without unconserved sides chains):
PDB file :
Tito_4H09.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H09-query.scw
PDB file :
Tito_Scwrl_4H09.pdb
: