Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------------------------------------------------------------MIKPNLRPKLGSSALIAFLSLYSSLVLNYAFFAKVVELHPFNGTGADIFLYTMPVVLFFLSNFVFHVIALPFVHKVLIPLILVISAAVSYQEIFFNIYFNKSMLNNVLQTTAAESARLITPGYVLWIVCLGVLPALAYIAVKVKYRVWYKELLTRLVLAAVSFLCALGIAML-----------QYQDYASFFRNNKSVTHLIVPSNFIGAGVSKYKDWKRSNIPYTQLDMAVVQNRPAGSLRR-----FVVLV---------VGETTRAANWGLNGYSRQTTPLLAARGDEIVNFPQVRSCGTSTAHSLPCMFSTFDRTDYDEIKAEHQDNLLDIVQRAGVEVTWLEN-----------DSGCKGVCGKVPNTDVTSLNLPEYCRNGECLDNILLTKFDEVLNKNDKDAVLILHTIGSHGPTYYERYTEAERKFTPTCDTNEINKCTRATLVNTYDNTVLYVDQFIDKVIRKLENRDDLESVVHYVSDHGESLGENGMYLHAAPYAIAPSGQTHIPMVMWFSKAFRQHGGIDFQCLKQKAAENEYSHDHYFSTVLGLMDISNSQTYRKEMDILAACRRPR |
| 1EQJ Chain:A ((3-510)) | KKPVALIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHTTLKACGEAVGLPEGQMGNSEVGHLNIGAGRIVYQSLTRINIAIRE---------GEFDRNETFLAAMNHVKQHGTS--------------------------------LHLFGLLSDG--------GVHSHIHHLYALLRLAAKEGVK------RVYIHGF------------LDGRDVGPQTAPQYIKELQEKIKEYGVGEIATLSGRYYSMDRDKRWDRVEKAYRAMVYGEGPTY--RDPLECIEDSYKHGIYDEFVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHPKHLF-----FVCLTHF---------------SETVAGYVAFKPTNLDNTIGEVLSQHGLRQLRIAETEKYPHVTFFMSGGREEEFPGEDRILINSPKVPTYDLKPEMSAYEVTDALLKEIEADKYD-AIILNYANP-------------DMVGHSGK------------LEPTIKAVEAVDECLGKVVDAILAKGG---IAIITADHGNA----DEVLTPDGKPQTAHTTNPVPVIVTKKGI---------------KLRDGGILGDLAPTMLDLLGLPQPKEMT-GKSLIV------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1EQJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -238990 for 3104 contacts (-77.0/contact) +
2D Compatibility (PS) -41643 + (NN) -4351 + (LL) 11312
1D Compatibility (HY) -9600 + (ID) 2150
Total energy: -285422.0 ( -91.95 by residue)
QMean score : 0.193
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