Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | AMIPLFK--VAVSPTALDRVAEVFASGYLGQGPRVAEFESALAARLGNPRVVSVHSGTSGLCLALRLLDAPEERDEVLSTPLTFEATNWAILADGRRITWVDVDPATLTMDLDDLERKISPATRAIIVVHWTGYPVDLDRLAGILDRAEREHGFRPAVIEDCAHAWGASYRGVPLGSHGNMCVFSFQALH-LTC-GDGGLLTLPGDELHERAMLRRFYGIDRTADRLRGAYDVAEWGLKWHMTDLNAAIGLANLETVDEQLRLHRENAAFYDKELTGVPGLELLQRSPDREGSFYVYDVKVDDRPAFHRKMEAAGIMAGLVSR-RNDEHSCV---AHLRTSLPGLDSVYDRMVSLPVGWWLTEQDREHVVATIRSGW |
| 3FRK Chain:A ((5-365)) | -FASFKPMHDEIEYEIKFKFEEIYKRNWFILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDI-GFGDEVIVPSNTFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITEKTKAIIAVHLYGQPADMDEIKRIAKK----YNL--KLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEK-------KYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNP-NVIIPVEADYAKHVWYTFVIRSEKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3FRK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -220319 for 3119 contacts (-70.6/contact) +
2D Compatibility (PS) -38740 + (NN) -19333 + (LL) 600
1D Compatibility (HY) -12400 + (ID) 3900
Total energy: -294092.0 ( -94.29 by residue)
QMean score : 0.451
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